COVID-19

As Zentralinstitut for Scientific Computing, we provide a platform to promote your COVID-19 modelling and simulation activities and to get in contact with other researchers in the same field. If you want to contribute feel free to write a short excerpt of your efforts and send it to us (zisc@fau.de). Education and outreach is beside research of course of great importance and this is why we want to collect efforts related to scientific computing in all these areas.

Education

E02) Lecture “Algorithmik kontinuierlicher Systeme” on Pandemic Models and Simulation (German; 2021)

Ulrich Rüde

E01) Lecture “Algorithmik kontinuierlicher Systeme” on Pandemic models and Simulation (German)

Ulrich Rüde

Research

R10) SARS-CoV-2 Spike Protein: Molecular Dynamics Simulations of Sequence Variants Compared to the Wild Type Protein

Eileen Socher, Marcus Conrad, Lukas Heger, Friedrich Paulsen, Heinrich Sticht, Friederike Zunke, Philipp Arnold

R09) Seminar Talk: Assessment of effective mitigation and prediction of the spread of SARS-CoV-2 in Germany using demographic information and spatial resolution

Martin Kühn (DLR)

R08) CFD simulations on the exposition of physicians to airborne pathogens during standard airway assessment

Michael Döllinger, Sarina Müller

R07) Analytical Mechanics Allows Novel Vistas on Mathematical Epidemic Dynamics Modelling

Paul Steinmann

R06) Two simulation models for COVID-19 epidemic dynamics and some related aspects

Reinhard German, Anatoli Djanatliev, Lisa Maile, Peter Bazan, Holger Hackstein

R05) Ambulance Logistics under Covid-19 Requirements

Frauke Liers

R04) Simulations of the spread of Covid-19 for different travel scenarios

Michael Schmiedeberg

R03) COVID-19 modelling with spatial resolution

Silvia Budday, Christian Burkhardt, Andreas Kergassner, Paul Steinmann

R02) Modeling infectious diseases using integro-differential equations: Optimal control strategies for policy decisions and Applications in COVID-19

Alexander Keimer, Lukas Pflug

R01) Data-driven COVID-19 modeling

Cyprien Neverov, Enrique Zuazua

Papers and Preprints

P11) Decomposition of the SARS-CoV-2-ACE2 interface reveals a common trend among emerging viral variants

Eileen Socher, Marcus Conrad, Lukas Heger, Friedrich Paulsen, Heinrich Sticht, Friederike Zunke, Philipp Arnold

Link to Preprint: bioRXiv

P10) SARS-CoV-2 Spike Protein: Molecular Dynamics Simulations of Sequence Variants Compared to the Wild Type Protein

Eileen Socher, Marcus Conrad, Lukas Heger, Friedrich Paulsen, Heinrich Sticht, Friederike Zunke, Philipp Arnold

Link to Paper: Biomedicine

P09) Memory-based meso-scale modeling of Covid-19

 Andreas Kergaßner, Christian Burkhardt, Dorothee Lippold, Matthias Kergaßner, Lukas Pflug, Dominik Budday, Paul Steinmann, Silvia Budday

Link to Paper: Computational mechanics

P08) Design of COVID-19 Staged Alert Systems to Ensure Healthcare Capacity with Minimal Closures

Haoxiang Yang, Özge Sürer, Daniel Duque, David P. Morton, Bismark Singh, Spencer J. Fox, Remy Pasco, Kelly Pierce, Paul Rathouz, Zhanwei Du, Michael Pignone, Mark E. Escott, Stephen I. Adler, S. Claiborne Johnston, Lauren Ancel Meyers

Link to Preprint: medRxiv

P07) International comparisons of COVID-19 deaths in the presence of comorbidities require uniform mortality coding guidelines

Bismark Singh

Link to Paper: IntJEpidem

P06) Selecting pharmacies for COVID-19 testing to ensure access

Simon Risanger, Bismark Singh, David Morton, Lauren Ancel Meyers

Link to Preprint: medRxiv

P05) Expanding Access to COVID-19 Tests through US Postal Service Facilities

Bismark Singh, Simon Risanger, David Morton, Michael Pignone, Lauren Ancel Meyers

Link to Paper: SAGE

P04) Timing social distancing to avert unmanageable COVID-19 hospital surges

Daniel Duque, David Paul Morton, Bismark Singh, Zhanwei Du, Remy Pasco, Lauren Ancel Meyers

Link to Paper: PNAS

P03) Modeling Exit Strategies from COVID-19 Lockdown with a Focus on Antibody Tests

Paul Steinmann

Link to Preprint: arXiv

P02) Modeling Exit Strategies from COVID-19 Lockdown with a Focus on Antibody Tests

Reinhard German, Anatoli Djanatliev, Lisa Maile, Peter Bazan, Holger Hackstein

Link to Preprint: medRXiv

P01) Modeling infectious diseases using integro-differential equations: Optimal control strategies for policy decisions and Applications in COVID-19

Alexander Keimer, Lukas Pflug

Link to Preprint: ResearchGate